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What is CryoSPARC?
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
📘 Local cryosparc_user account on HPC
CryoSPARC requires a local user account named cryosparc_user that is used to control needed CryoSPARC resources and job allocations.
When looking to run CryoSPARC jobs, a user would need to connect/login into HPC as the cryosparc_user account.
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Submit an interactive SLURM job:
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Login screen for CryoSparc should show up, login using CryoSparc account details, launch CryoSparc job to gpu node that was assigned to the interactive SLURM srun job in previous step.
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If there is a network interruption, the CryoSparc Master process on the gpu node will crash. There is a /tmp/ cryosparc .sock file that would need to be removed to refresh and allow cryosparc to continue running on a node that had the brief interruption. |