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Once logged in, the CryoSPARC web GUI should load looking like the following:

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This this web GUI, the The process of launching and submitting CryoSPARC job(s) should be the same.

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Info

If there is a network interruption, the CryoSparc Master process on the gpu node will crash. There is a /tmp/ cryosparc .sock file that would need to be removed to refresh and allow cryosparc to continue running on a node that had the brief interruption.

📘 Cleaning up CryoSPARC environment after job finishes

Once the running CryoSPARC job finishes, the following steps are recommended to exit CryoSPARC cleanly and free up the assigned GPU node to allow other users to submit jobs to the GPU node:

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  1. Log off of the CryoSPARC GUI and close the browser tab.

  2. Go back to the terminal that is logged into HPC with the running interactive srun job and stop the master CryoSPARC process using the following command: cryosparcm stop

  3. Exit out of the interactive SLURM job to free up the assigned GPU node.

  4. If the CryoSPARC calculations are all set, it is recommended to log off of the cryosparc_user HPC account.