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#!/bin/bash #SBATCH --partition=general # Name of Partition #SBATCH --ntasks=126 # Maximum CPU cores for job #SBATCH --nodes=1 # Ensure all cores are from the same node #SBATCH --mem=492G # Request 128 GB of available RAM #SBATCH --constraint='epyc128' # Request AMD EPYC node for the job #SBATCH --mail-type=END # Event(s) that triggers email notification (BEGIN,END,FAIL,ALL) #SBATCH --mail-user=first.lastname@uconn.edu # Destination email address module load schrodinger/2022-4 host=`srun hostname|head -1` nproc=`srun hostname|wc -l` <schrodinger program> -HOST ${host}:${nproc} <other options> |
Example Submission Script GPU
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#!/bin/bash #SBATCH --partition=general-gpu # Name of Partition #SBATCH --ntasks=20 # Maximum CPU cores for job #SBATCH --nodes=1 # Ensure all cores are from the same node #SBATCH --mem=128G # Request 128 GB of available RAM #SBATCH --gres=gpu:2 # Request 2 GPU cards for the job #SBATCH --mail-type=END # Event(s) that triggers email notification (BEGIN,END,FAIL,ALL) #SBATCH --mail-user=first.lastname@uconn.edu # Destination email address module load schrodinger/2022-4 host=`srun hostname|head -1` nproc=`srun hostname|wc -l` <schrodinger program> -HOST ${host}:${nproc} <other options> |